I am importing comics via iTunes to a iPad, comics are succesfully imported, but they are now into the library root folder, and I don't know how to move them to the folders I've have created.

Some of the folders and comics already imported were imported using the wireless connection through Yacreadr Library, but this method not always works well, once you hit the "import" button you don't have any idea of the progress, it takes ages, etc. iTunes importing using USB is faster, but then how I do arrange my comics once imported?

Take a look at this www.yacreader.com/forum/support-ios/321-...ew-ipad-version#1607 that's where you can see the import progress and controll it: pause, remove, resume.....

In a local network importing from YACReaderLibrary should work reasonably well.

You can do a right to left swipe on comics for selecting them to be copied or moved, you can select various items at once. In this video you can see how it works